Schedule

Monday, November 10th
Introductory Block on Basics on Linux and Programming
9h - 11h Hardware and Software Basic concepts
11.30h - 13.30h Linux environment.
15h - 17h Programming languages basic concepts
Tuesday, November 11th
Introduction to Bioinformatics: R programming language and environment
10h - 13h R programming language I
15h - 18h R programming language II
Wednesday, November 12th
Perl and BioPerl
9h - 11h Summary of Perl concepts and properties.
11.30h - 13.30h Principles of Perl Object-Oriented programing.
15h - 17h Sequence and file manipulation with Perl and BioPerl
17.30h - 19.30h Using the SAMTools Bioperl interface and Creating graphics from sequence data
Thursday, November 13th
Relational Databases
9h - 11h Introduction to Relational Databases
11.30h - 13.30h Creating relational databases from sequence data
15h - 17h Manipulating databases with Perl
Friday, November 14th
Computing clusters and Useful computing concepts in Bioinformatics
9h - 11h Computing clusters: CRAG computing cluster as an example
11.30h - 13.30h Useful computing concepts in Bioinformatics I
15h - 17h Useful computing concepts in Bioinformatics II. Discussion.